Plant Genomics: Emerging Tools

A Special Collection of Articles from The Plant Cell from September 1999–January 2001

FUNCTIONAL GENOMICS: GENE IDENTIFICATION

Function Search in a Large Transcription Factor Gene Family in Arabidopsis: Assessing the Potential of Reverse Genetics to Identify Insertional Mutations in R2R3 MYB Genes. (October 1999) 11, 1827–1840.

Ruth C. Meissner, Hailing Jin, Eleonora Cominelli, Marten Denekamp, Antonio Fuertes, Raffaella Greco, Harald D. Kranz, Steven Penfield, Katia Petroni, Ana Urzainqui, Cathie Martin, Javier Paz-Ares, Sjef Smeekens, Chiara Tonelli, Bernd Weisshaar, Elvira Baumann, Victor Klimyuk, Sylvestre Marillonnet, Kanu Patel, Elly Speulman, Alain F. Tissier, David Bouchez, Jonathan D.G. Jones, Andy Pereira, Ellen Wisman, and Michael Bevan

Multiple Independent Defective Suppressor-mutator Transposon Insertions in Arabidopsis: A Tool for Functional Genomics. (October 1999) 11, 1841–1852.

Alain F. Tissier, Sylvestre Marillonnet, Victor Klimyuk, Kanu Patel, Miguel Angel Torres, George Murphy, and Jonathan D.G. Jones

A Two-Component Enhancer-Inhibitor Transposon Mutagenesis System for Functional Analysis of the Arabidopsis Genome. (October 1999) 11, 1853–1866.

Elly Speulman, Peter L.J. Metz, Gert van Arkel, Bas te Lintel Hekkert, Willem J. Stiekema, and Andy Pereira

Analysis of Flanking Sequences from Dissociation Insertion Lines: A Database for Reverse Genetics in Arabidopsis. (December 1999) 11, 2263–2270.

Serguei Parinov, Mayalagu Sevugan, De Ye, Wei-Cai Yang, Mande Kumaran, and Venkatesan Sundaresan

Ten Years of Enhancer Detection: Lessons from the Fly. (December 1999) 11, 2271–2281.

Hugo J. Bellen

T-DNA as an Insertional Mutagen in Arabidopsis. (December 1999) 11, 2283–2290.

Patrick J. Krysan, Jeffery C. Young, and Michael R. Sussman

Gene Traps: Tools for Plant Development and Genomics. (July 2000) 12, 1007–1020.

Patricia S. Springer

Cloning of the Arabidopsis RSF1 Gene by Using a Mapping Strategy Based on High-Density DNA Arrays and Denaturing High-Performance Liquid Chromatography. (December 2000) 12, 2485–2498.

Jamie I. Spiegelman, Michael N. Mindrinos, Christian Fankhauser, Daniel Richards, Jason Lutes, Joanne Chory, and Peter J. Oefner

FUNCTIONAL GENOMICS: GENE EXPRESSION, PROTEOMICS, AND METABOLIC PROFILING

Expression Profiling of the Maize Flavonoid Pathway Genes Controlled by Estradiol-Inducible Transcription Factors CRC and P. (January 2000) 12, 65–80. Wesley Bruce, Otto Folkerts, Carl Garnaat, Oswald Crasta, Brad Roth, and Ben Bowen

Identification of the SAAT Gene Involved in Strawberry Flavor Biogenesis by Use of DNA Microarrays. (May 2000) 12, 647–661.

Asaph Aharoni, Leopold C.P. Keizer, Harro J. Bouwmeester, Zhongkui Sun, Mayte Alvarez-Huerta, Harrie A. Verhoeven, Jan Blaas, Adčle M.M.L. van Houwelingen, Ric C.H. De Vos, Hilko van der Voet, Ritsert C. Jansen, Monique Guis, Jos Mol, Ronald W. Davis, Mark Schena, Arjen J. van Tunen, and Ann P. O’Connell

Differential Gene Expression in Response to Mechanical Wounding and Insect Feeding in Arabidopsis. (May 2000) 12, 707–719.

Phillipe Reymond, Hans Weber, Martine Damond, and Edward E. Farmer

cDNA-AFLP Reveals a Striking Overlap in Race-Specific Resistance and Wound Response Gene Expression Profiles. (June 2000) 12, 963–977.­

Wendy E. Durrant, Owen Rowland, Pedro Piedras, Kim E. Hammond-Kosack, and Jonathan D.G. Jones

Microarray Analysis of Diurnal and Circadian-Regulated Genes in Arabidopsis. (January 2001) 13, 113–123.

Robert Schaffer, Jeff Landgraf, Monica Accerbi, Vernadetter Simon, Matt Larson, and Ellen Wisman

Monitoring the Expression Pattern of 1300 Arabidopsis Genes under Drought and Cold Stresses Using a Full-Length cDNA Microarray. (January 2001) 13, 61–72.

Motoaki Seki, Mari Narusaka, Hiroshi Abe, Mie Kasuga, Kazuko Yamaguchi-Shinozaki, Piero Carninci, Yoshihide Hayashizaki, and Kazuo Shinozaki

Genomic Analysis of a Nutrient Response in Arabidopsis Reveals Diverse Expression Patterns and Novel Metabolic and Potential Regulatory Genes Induced by Nitrate. (August 2000) 12, 1491–1509.

Rongchen Wang, Karl Guegler, Samuel T. LaBrie, and Nigel M. Crawford

Proteomics of the Chloroplast: Systemic Identification and Targeting Analysis of Lumenal and Peripheral Thylakoid Proteins. (March 2000) 12, 319–341.

Jean-Benoit Peltier, Giula Friso, Dŕrio Eluan Kalume, Peter Roepstorff, Frederik Nilsson, Iwona Adamsak, and Klass J. van Wijk

Metabolic Profiling Allows Comprehensive Phenotyping of Genetically or Environmentally Modified Plant Systems. (January 2001) 13, 11–29.

Ute Roessner, Alexander Luedemann, Thomas Linke, Lothar Willmitzer, and Alisdair Fernie

COMPARATIVE GENOMICS

Comparative Genomics Organization in Plants: From Sequence and Markers to Chromatin and Chromosomes. (May 2000) 12, 617–635.

J.S. Heslop-Harrison

Genome Relationships: The Grass Model in Current Research. (May 2000) 12, 637–646.

Katrien M. Devos and Mike D. Gale

Comparative Sequence Analysis of Plant Nuclear Genomes: Microlinearity and Its Many Exceptions. (July 2000) 12, 1021–1029.

Jeffrey L. Bennetzen

Extensive Duplication and Reshuffling in the Arabidopsis Genome. (July 2000) 12, 1093–1101.

Guillaume Blanc, Abdelali Barakat, Romain Guyot, Richard Cooke, and Michel Delseny

Comparative Genomics of Plant Chromosomes. (September 2000) 12, 1523–1540.

Andrew H. Paterson, John E. Bowers, Mark D. Burow, Xavier Draye, Christine G. Elsik, Chun-Xiao Jiang, Catherine Susan Katsar, Tien-Hung Lan, Yann-Rong Lin, Reiguang Ming, and Robert J. Wright